RSpace RDM integration resources

Miscellaneous RDM related resources and publications as an example of how RSpace can make documents available to non-RSpace users.

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<p><strong>Fully searchable RSpace online documentation:</strong></p>
<p><a href="https://documentation.researchspace.com">https://documentation.researchspace.com/</a></p>
<p>RSpace overview document:</p>
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<p>Position paper on RSpace future direction as an RDM platform</p>
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<p style="text-align: left;"><strong>Video: Working with RSpace forms and templates</strong></p>
<p style="text-align: left;">In this recording, Rob Day discusses ways to get started quickly with RSpace and describes how to avoid 're-inventing the wheel' and enhance reproducibility &nbsp;by turning your most common research and data management workflows into RSpace templates.&nbsp;</p>
<p style="text-align: left;"><strong><span style="font-size: 20px;"><a href="https://mediacentral.ucl.ac.uk/Play/135018">https://mediacentral.ucl.ac.uk/Play/135018</a></span></strong></p>
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<p>The RSpace RDM and FAIR data ecosystem:</p>
<p style="text-align: center;">(click for higher resolution view)</p>
<p style="text-align: center;"><img id="12550297-59957" class="imageDropped inlineImageThumbnail" style="display: block; margin-left: auto; margin-right: auto;" src="/thumbnail/data?sourceType=IMAGE&amp;sourceId=59957&amp;sourceParentId=12550297&amp;width=644&amp;height=455&amp;rotation=0&amp;time=1772551174522" alt="image 01 Main graphic.png" width="778" height="550" data-size="644-455" data-rotation="0" /></p>
<p style="text-align: center;">&nbsp;</p>
<h2 style="text-align: left;">More specific examples:</h2>
<p style="text-align: left;"><br /><span style="font-size: 12px;">1) Many universities to connect their Research Data Management Plans (DMP) with bundled lab notes, raw data and HPC analysis results that have been deposited in a repository such as dataverse:</span></p>
<p style="text-align: center;"><span style="font-size: 12px;"><img id="12550297-55179" class="imageDropped inlineImageThumbnail" style="display: block; margin-left: auto; margin-right: auto;" src="/thumbnail/data?sourceType=IMAGE&amp;sourceId=55179&amp;sourceParentId=12550297&amp;width=644&amp;height=224&amp;rotation=0&amp;time=1754055461066" alt="image RSpace irods dataverse.png" width="644" height="224" data-size="644-224" data-rotation="0" /></span></p>
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<p><span style="font-size: 12px;"><strong>Video of this DMPTool – RSpace – Dataverse integration in action demonstrated by Rob Day:</strong></span><br /><span style="font-size: 12px;"><a href="https://www.youtube.com/watch?v=SfEjvWogx5g">https://www.youtube.com/watch?v=SfEjvWogx5g</a></span></p>
<p style="text-align: left;"><span style="font-size: 12px;">2) RSpace sends completed project data bundles to repository, repository generates DOI then RSpace distributes DOI to both original DMP and to the correct associated RAiD entry for that project:</span></p>
<p style="text-align: center;"><img id="12550297-62031" class="imageDropped inlineImageThumbnail" style="display: block; margin-left: auto; margin-right: auto;" src="/thumbnail/data?sourceType=IMAGE&amp;sourceId=62031&amp;sourceParentId=12550297&amp;width=644&amp;height=630&amp;rotation=0&amp;time=1782829100776" alt="image drac demo.png" width="644" height="630" data-size="644-630" data-rotation="0" /></p>
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<p class="wrap-overflowing-text"><span style="font-size: 12px;">Tilo Mathes discusses exports from a project group with RAID ID:</span></p>
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<p id="record-title" class="wrap-overflowing-text"><span style="font-size: 12px; font-family: arial, helvetica, sans-serif;">Research Commons - An Opportunity for European Research Infrastructure, downloadable from Zenodo.</span></p>
<p class="wrap-overflowing-text"><span style="font-size: 12px; font-family: arial, helvetica, sans-serif;"><a href="https://zenodo.org/records/13935696">https://zenodo.org/records/13935696</a></span></p>
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<p><span style="font-size: 12px;">Proposal for presentation at BRICCS PATHWAYS 2026 <a href="https://hprc.tamu.edu/briccs/workshop_2026.html">https://hprc.tamu.edu/briccs/workshop_2026.html</a></span></p>
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<p>Recent iRODs presentation:</p>
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<p>Recent presentation by Rob Day related to increased use of FAIR data principals in US based scientific facilities.</p>
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<p>Additional slides from that workshop are available here: <a href="https://ncar.github.io/FAIR-Facilities-Instruments/presentations#august-2024-workshop-at-florida-state-university">https://ncar.github.io/FAIR-Facilities-Instruments/presentations#august-2024-workshop-at-florida-state-university</a></p>
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<p><strong>Advancing Research Data Management through Enhanced Vertical Interoperability Rob Day and Vaida Plankyté Texas Digital Library 2025</strong></p>
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<p>General article about using identifiers in RSpace available for download from Zenodo:</p>
<p class="p1"><span class="s1"><a href="https://zenodo.org/record/8284206">https://zenodo.org/record/8284206</a> </span></p>
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<p>Another recent presentation by Rory Macneil:</p>
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<p>Galaxy integration, allowing users to send data out of RSpace for analysis by this powerful third-party tool:</p>
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<p>https://youtu.be/PTCnbcwyWhg?si=6umqLhNtZ14A1OhV<br /><br /></p>
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<p class="p1">Putting the GORC model to work: REASON, the proposed national research commons for Norway</p>
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<p>Integration with <span class="s1">Fieldmark mobile application for offline collection of sample data in the field when no network connection is available.<br /><br /><a href="https://fieldnote.au/fieldmark/">https://fieldnote.au/fieldmark/</a></span></p>
<p class="p1"><span class="s1">(click for higher resolution view)</span></p>
<p><img id="12550297-51084" class="imageDropped inlineImageThumbnail" style="display: block; margin-left: auto; margin-right: auto;" src="/thumbnail/data?sourceType=IMAGE&amp;sourceId=51084&amp;sourceParentId=12550297&amp;width=644&amp;height=328&amp;rotation=0&amp;time=1728912552086" alt="image Screenshot 2024-09-09 at 22.10.43.PNG" width="851" height="433" data-size="644-328" data-rotation="0" /></p>
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<p>Jupyter notebook - RSpace interaction via API, use case example:</p>
<p class="p1"><span class="s1"> <a href="https://documentation.researchspace.com/article/5xqzm36v9t-video-round-trip-data-analysis-using-jupyter-notebook-and-the-rspace-api">https://documentation.researchspace.com/article/5xqzm36v9t-video-round-trip-data-analysis-using-jupyter-notebook-and-the-rspace-api</a></span></p>
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<h3>&nbsp;</h3>
<p>Example of using a CSV file intermediate used to recreate data schema of a third party web database that lacks an API. For third party systems with good modern APIs, this transfer can be performed more efficiently via the APIs of the two systems.</p>
<p>(click for higher resolution view)</p>
<p><img id="12550297-51112" class="imageDropped inlineImageThumbnail" style="display: block; margin-left: auto; margin-right: auto;" src="/thumbnail/data?sourceType=IMAGE&amp;sourceId=51112&amp;sourceParentId=12550297&amp;width=644&amp;height=377&amp;rotation=0&amp;time=1729014251014" alt="image 02 chebi.png" width="855" height="501" data-size="644-377" data-rotation="0" /></p>
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<h3>&nbsp;</h3>
<h2>Examples of integrations created by the independent open source community:<br /><br /></h2>
<p><a href="https://lacdr.github.io/rspacer-manuscript/"><span style="font-size: 20px;">rspacer: an RSpace API wrapper </span><span style="font-size: 20px;">Integrating the RSpace ELN into computational workflows</span></a></p>
<h1 class="heading-element"><a href="https://github.com/rspace-os/rspace-mcp"><span style="font-size: 20px;">RSpace MCP server</span></a></h1>
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<h3>&nbsp;</h3>
<h3 id="simple_example_using_apple_mac_terminal_to_upload_a_file_to_the_gallery"></h3>
<h2><span style="color: black; font-size: 20px;">Simple API example using Apple Mac terminal to upload a file to the gallery</span></h2>
<p>See youtube video&nbsp;<a href="https://www.youtube.com/watch?v=4p5aiBSmHLc">here</a>. This workflow allows fast, contemporaneous capture of files as soon as they are created so that they are immediately stored safe and sound in RSpace.</p>
<p>You can try something similar using by downloading the ZIP file below and following the instructions in the readme file.</p>
<p><a href="https://files.helpdocs.io/6vvf1kbpym/other/1685553089792/rspace-apidemo.zip">Download .ZIP file</a></p>
<p>This workflow can be useful for tasks such as automatically collecting files output by instruments and sending them to RSpace as soon as they are created.</p>
<p>If you are a developer interested in learning more about our API and python SDK you can learn more here:<br /><br /><a href="https://documentation.researchspace.com/category/ifpi5pwbck-for-developers">https://documentation.researchspace.com/category/ifpi5pwbck-for-developers</a></p>
<p>&nbsp;</p>
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<p>&nbsp;</p>
<p>Recent training recordings from UCL:</p>
<p class="p1"><a href="https://mediacentral.ucl.ac.uk/Play/92124">https://mediacentral.ucl.ac.uk/Play/92124</a></p>
<p class="p1"><a href="https://mediacentral.ucl.ac.uk/Play/96140">https://mediacentral.ucl.ac.uk/Play/96140</a></p>
<p class="p1"><a href="https://mediacentral.ucl.ac.uk/Play/94010">https://mediacentral.ucl.ac.uk/Play/94010</a></p>
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<p>&nbsp;</p>
<p>Some resources to help understand the 21CFR11 rule set and various other industry compliance and data sharing guidelines related to ELNs:</p>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
<p>Blog article on benefits of open source ELNs:</p>
<p><a href="https://elnsoftware.blogspot.com/2025/04/open-source-electronic-lab-notebooks.html">https://elnsoftware.blogspot.com/2025/04/open-source-electronic-lab-notebooks.html</a></p>
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<p>&nbsp;</p>
<p><span style="font-size: 16px;"><strong>Schedule and RSpace demo with Rob Day (rob (at) researchspace.com) using this booking link:</strong></span></p>
<p><a href="https://go.oncehub.com/RobDay">https://go.oncehub.com/RobDay</a></p>
<p>&nbsp;</p>

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RSpace RDM integration resources

Miscellaneous RDM related resources and publications as an example of how RSpace can make documents available to non-RSpace users.

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